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    19 repositories

    • arboretum

      Public
      Track and lineage visualization with btrack and Napari :evergreen_tree:
      visualizationcell-trackingnaparibtrack
      Python
      •
      MIT License
      •9•45•15•0•Updated Sep 29, 2025Sep 29, 2025

    • CELL0027

      Public
      Computational Cell Biophysics
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Mar 6, 2024Mar 6, 2024

    • staged-recipes

      Public
      A place to submit conda recipes before they become fully fledged conda-forge feedstocks
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5.7k•0•0•0•Updated Nov 21, 2023Nov 21, 2023

    • unet_segmentation_metrics

      Public
      Metrics for determining segmentation accuracy
      Jupyter Notebook
      •
      MIT License
      •10•37•1•0•Updated Nov 21, 2023Nov 21, 2023

    • ctc-tools

      Public
      CTC tools
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 16, 2023Nov 16, 2023

    • btrack-examples

      Public
      Shell
      •
      MIT License
      •0•0•0•0•Updated Aug 8, 2023Aug 8, 2023

    • cellx-predict

      Public
      Explainable AI model of cell behavior
      machine-learningvariational-autoencodercell-trackingcell-biologyexplainable-ai
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •11•20•8•3•Updated Apr 4, 2023Apr 4, 2023

    • octopuslite-reader

      Public
      reader for octopuslite data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•2•3•0•Updated Mar 23, 2023Mar 23, 2023

    • napari-btrack

      Public archive
      Napari plugin for btrack
      naparibtrack
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•0•0•Updated Mar 22, 2023Mar 22, 2023

    • napari-btrack-reader

      Public archive
      Napari plugin to load btrack files
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Mar 3, 2023Mar 3, 2023

    • trajectoryflow

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•6•1•0•Updated Dec 12, 2022Dec 12, 2022

    • cell-cycle-scivision

      Public
      Python
      •0•0•0•0•Updated Nov 29, 2022Nov 29, 2022

    • cnn-annotator

      Public
      Annotate microscopy images for CNN classifier
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •7•11•4•0•Updated May 31, 2022May 31, 2022

    • segment-classify-track

      Public
      Full processing piepline for cell tracking
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•5•0•Updated Mar 24, 2022Mar 24, 2022

    • cellx-predict-scivision

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Feb 11, 2022Feb 11, 2022

    • protocols

      Public
      Lab protocols
      1•1•3•0•Updated Feb 4, 2022Feb 4, 2022

    • simple-unet

      Public
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Oct 8, 2021Oct 8, 2021

    • btrack-hyperparams

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated May 28, 2021May 28, 2021

    • napari-trackmate-reader

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 13, 2020Nov 13, 2020