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@mcwdsi Medical College of Wisconsin Data Science Institute

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    42 repositories

    • rehabo

      Public
      The Rehabilitation Ontology
      Makefile
      •0•0•3•0•Updated Feb 10, 2026Feb 10, 2026

    • OMRSE

      Public
      The Ontology for Modeling and Representation of Social Entities
      obofoundry
      Makefile
      •
      Creative Commons Attribution 4.0 International
      •7•21•13•0•Updated Feb 5, 2026Feb 5, 2026

    • dron

      Public
      obofoundry
      Makefile
      •
      Creative Commons Attribution 4.0 International
      •1•10•1•0•Updated Feb 4, 2026Feb 4, 2026

    • rehabo-old

      Public
      The Rehabilitation Ontology
      0•0•0•0•Updated Feb 3, 2026Feb 3, 2026

    • rt2

      Public
      Referent Tracking 2.0
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Feb 1, 2026Feb 1, 2026

    • bam2tensor

      Public
      Convert methylation data to sparse objects for machine learning.
      machine-learningmethylation
      Python
      •
      MIT License
      •0•1•0•3•Updated Feb 1, 2026Feb 1, 2026

    • geographical-entity-ontology

      Public
      An ontology and inventory of geopolitical entities (such as sovereign states and their administrative subdivisions) as well as various geographical regions (inc…
      Shell
      •
      Creative Commons Attribution 4.0 International
      •5•11•11•1•Updated Feb 19, 2025Feb 19, 2025

    • onto-intersect

      Public
      Given two OWL files as input, outputs all the classes and properties they have in common.
      Shell
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jan 6, 2025Jan 6, 2025

    • rt2n4j

      Public
      Python
      •
      Apache License 2.0
      •1•0•0•1•Updated Oct 31, 2024Oct 31, 2024

    • rt2reflector

      Public
      Referent Tracking ETL for RT2.0
      Apache License 2.0
      •1•0•0•1•Updated Oct 31, 2024Oct 31, 2024

    • mcwdsi.github.io

      Public
      Website for the Data Science Institute at the Medical College of Wisconsin
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 30, 2024Jun 30, 2024

    • rts_core

      Public
      Core referent tracking fundamentals
      Java
      •2•0•0•0•Updated Jun 26, 2024Jun 26, 2024

    • general-conversion-to-owl2

      Public
      Java code to convert conventional data into to OWL2
      Java
      •
      Apache License 2.0
      •1•0•0•0•Updated Jun 12, 2024Jun 12, 2024

    • RTDB-Neo4J

      Public
      a Neo4J based implementation of Referent Tracking
      Java
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 7, 2024Jun 7, 2024

    • iso8601

      Public
      Implementation of ISO 8601 date/time formatting standard
      Java
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 7, 2024Jun 7, 2024

    • common_utils

      Public
      Java
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 7, 2024Jun 7, 2024

    • obc-pubmed

      Public
      midasobc
      Python
      •
      Apache License 2.0
      •0•0•0•1•Updated May 21, 2024May 21, 2024

    • m1-df-only

      Public
      Implementation of M1 with data format matching only
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 17, 2024Mar 17, 2024

    • .github

      Public
      MCW DSI overview
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Oct 6, 2023Oct 6, 2023

    • dron-chebi-mapper

      Public
      Calls BioPortal API to look for matches in ChEBI to DrOn ingredient terms derived from RxNorm
      translationchebidron
      Java
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 17, 2023Aug 17, 2023

    • dron-query

      Public
      command line app for querying Drug Ontology using DL queries via reasoner
      dronowl-query
      Java
      •0•1•1•0•Updated Aug 17, 2023Aug 17, 2023

    • obc-ide-owl

      Public
      OWL files for the OBC.ide project
      mdcmidasobc
      1•1•1•0•Updated Dec 10, 2022Dec 10, 2022

    • mdc-sparql

      Public
      sparql queries for the midas digital commons
      mdcmidas
      0•0•0•0•Updated Dec 10, 2022Dec 10, 2022

    • ORCS

      Public
      Ontology for Representing CDM Semantics
      ontologycdm
      Makefile
      •0•0•0•0•Updated Mar 11, 2022Mar 11, 2022

    • midas-data-mapping-to-apollo-sv

      Public
      midasmccmidasowl
      0•0•0•0•Updated Nov 28, 2021Nov 28, 2021

    • mdc_search

      Public
      SPARQL queries for searching MIDAS Digital Commons for valid combinations of datasets and software
      mdcmidas
      JavaScript
      •0•0•0•0•Updated May 7, 2021May 7, 2021

    • mdc_meter

      Public
      SPARQL queries to compute FAIR metrics in MIDAS Digital Commons
      mdcmidas
      JavaScript
      •0•0•0•0•Updated May 7, 2021May 7, 2021

    • mdc_tree

      Public
      mdcmidas
      JavaScript
      •0•0•0•0•Updated May 7, 2021May 7, 2021

    • mcc-portal-rdf-constraints

      Public
      midasmcc
      0•0•0•0•Updated Feb 19, 2021Feb 19, 2021

    • PCORowl

      Public archive
      Modelling the PCORnet CDM in an OBO Compliant OWL Ontology
      Python
      •
      Other
      •0•0•0•1•Updated Dec 23, 2020Dec 23, 2020