Sali Lab

All

88 repositories

imp
Public
The Integrative Modeling Platform
python c-plus-plus structural-biology protein-structure integrative-modeling
C++
•
GNU General Public License v3.0
•33•81•63•0•Updated Feb 18, 2026Feb 18, 2026
modloop
Public
Web server for automated modeling of loops in protein structures
protein-structure web-service loop-prediction
Python
•
GNU Lesser General Public License v2.1
•2•7•0•0•Updated Feb 13, 2026Feb 13, 2026
rmf
Public
The library to support reading and writing of RMF files.
python c-plus-plus structural-biology protein-structure integrative-modeling
C++
•
Apache License 2.0
•0•9•7•0•Updated Feb 13, 2026Feb 13, 2026
IHMValidation
Public
Validation software for integrative models deposited to PDB
Python
•
MIT License
•3•3•21•1•Updated Feb 13, 2026Feb 13, 2026
systems-tests
Public
Scripts to populate integrative modeling "systems" pages
integrative-modeling
Python
•
MIT License
•0•0•0•0•Updated Feb 12, 2026Feb 12, 2026
systems-web
Public
Web application to show integrative modeling "systems" pages
flask integrative-modeling
Python
•
MIT License
•0•0•0•0•Updated Feb 12, 2026Feb 12, 2026
EnsembleInference.jl
Public
Julia
•
MIT License
•0•0•1•6•Updated Feb 9, 2026Feb 9, 2026
imp-sampcon
Public
Scripts to assess sampling convergence and exhaustiveness
Python
•
GNU General Public License v2.0
•7•3•4•1•Updated Feb 8, 2026Feb 8, 2026
SSEThread
Public
Integrative threading of protein structure using secondary structure elements
Python
•
GNU Lesser General Public License v2.1
•0•0•0•0•Updated Feb 8, 2026Feb 8, 2026
imp_website
Public
Website for the IMP project
php website
PHP
•
Creative Commons Attribution Share Alike 4.0 International
•1•0•0•0•Updated Feb 5, 2026Feb 5, 2026
lab_website
Public
Source files for parts of the Sali Lab website
website jinja2
HTML
•
Creative Commons Attribution Share Alike 4.0 International
•0•0•0•0•Updated Feb 5, 2026Feb 5, 2026
raindrops
Public
Data driven optimal rigid bodies from protein complexes
Python
•
GNU General Public License v2.0
•0•0•0•0•Updated Feb 5, 2026Feb 5, 2026
imp_nightly_builds
Public
Infrastructure to build and test IMP on a nightly basis
Python
•
Creative Commons Attribution Share Alike 4.0 International
•0•0•0•0•Updated Feb 5, 2026Feb 5, 2026
optrep
Public
IMP module for optimal coarse-grained bead representation
Python
•
GNU Lesser General Public License v2.1
•1•0•5•0•Updated Feb 2, 2026Feb 2, 2026
domino3
Public
Experimental DOMINO variant using traditional inference
C++
•
GNU Lesser General Public License v2.1
•0•1•0•0•Updated Feb 2, 2026Feb 2, 2026
imp_coding_tutorial
Public
Introduction to writing IMP code
c-plus-plus tutorial integrative-modeling
Python
•
Creative Commons Attribution Share Alike 4.0 International
•0•0•0•0•Updated Feb 2, 2026Feb 2, 2026
emseqfinder_tutorial
Public
Demonstration of using the emseqfinder tool
Creative Commons Attribution Share Alike 4.0 International
•0•0•0•0•Updated Jan 30, 2026Jan 30, 2026
imp_tutorial
Public
Tutorial that demonstrates the modeling of RNA Polymerase II using Electron Microscopy density and chemical crosslinks
python tutorial integrative-modeling
Python
•
Creative Commons Attribution Share Alike 4.0 International
•5•3•1•1•Updated Jan 30, 2026Jan 30, 2026
imp_spatiotemporal_tutorial
Public
Tutorial for computing spatiotemporal integrative models in IMP
Python
•
Creative Commons Attribution Share Alike 4.0 International
•0•0•0•0•Updated Jan 30, 2026Jan 30, 2026
imp_analysis_tutorial
Public
Python
•
Other
•2•0•1•0•Updated Jan 30, 2026Jan 30, 2026
actin_tutorial
Public
IMP/PMI tutorial, modeling the complex of actin and tropomodulin-gelsolin chimera
tutorial integrative-modeling
Python
•
Creative Commons Attribution Share Alike 4.0 International
•0•0•1•0•Updated Jan 30, 2026Jan 30, 2026
imp_using_cpp_tutorial
Public
Tutorial on using IMP as a library in other C++ projects
c-plus-plus tutorial integrative-modeling
CMake
•
Creative Commons Attribution Share Alike 4.0 International
•0•0•0•0•Updated Jan 30, 2026Jan 30, 2026
cross_linking_tutorial
Public
Introduction to working with cross-linking data using IMP
tutorial structural-biology integrative-modeling binder-ready
Jupyter Notebook
•
Creative Commons Attribution Share Alike 4.0 International
•0•1•0•0•Updated Jan 30, 2026Jan 30, 2026
imp_brownian_dynamics_tutorial
Public
Tutorial for running Brownian dynamics simulations using IMP
tutorial integrative-modeling brownian-dynamics
Jupyter Notebook
•
Creative Commons Attribution Share Alike 4.0 International
•1•0•0•0•Updated Jan 30, 2026Jan 30, 2026
profiling_tutorial
Public
Tutorial on CPU profiling of IMP code using Google's gperftools
tutorial profiling integrative-modeling
Creative Commons Attribution Share Alike 4.0 International
•0•0•0•0•Updated Jan 30, 2026Jan 30, 2026
imp_deposition_tutorial
Public
Introduction to depositing IMP models in PDB-IHM
tutorial archival integrative-modeling deposition binder-ready
Jupyter Notebook
•
Creative Commons Attribution Share Alike 4.0 International
•0•0•0•0•Updated Jan 30, 2026Jan 30, 2026
imp_valgrind_tutorial
Public
Tutorial on debugging IMP code with Valgrind
c-plus-plus tutorial integrative-modeling
CMake
•
Creative Commons Attribution Share Alike 4.0 International
•0•0•0•0•Updated Jan 30, 2026Jan 30, 2026
foxs_tutorial
Public
Tutorial for fitting against SAXS data using FoXS and MultiFoXS
tutorial command-line small-angle-xray integrative-modeling
Jupyter Notebook
•
Creative Commons Attribution Share Alike 4.0 International
•0•0•0•0•Updated Jan 30, 2026Jan 30, 2026
tutorial_tools
Public
🛠 Support infrastructure useful for all IMP tutorials
python tutorial build-tools
Python
•
GNU Lesser General Public License v2.1
•0•0•0•0•Updated Jan 29, 2026Jan 29, 2026
homebrew-salilab
Public
🍻 Sali Lab formulae for homebrew
ruby homebrew formulae science
Ruby
•
Creative Commons Attribution Share Alike 4.0 International
•0•1•0•0•Updated Jan 29, 2026Jan 29, 2026