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    121 repositories

    • webknossos-libs

      Public
      Python API and CLI tools for working with WEBKNOSSOS datasets, annotations and server interactions. Includes converter to OME-Zarr.
      hacktoberfestwebknossosvolume-emome-zarr-converter
      Python
      •14•27•57•5•Updated Feb 17, 2026Feb 17, 2026

    • webknossos

      Public
      Visualize, share and annotate your large 3D images online
      neurobiologyreconstructionconnectomicsemmicroscopyhacktoberfestmicroscopy-images
      TypeScript
      •
      GNU Affero General Public License v3.0
      •28•164•476•17•Updated Feb 17, 2026Feb 17, 2026

    • zarr-matlab

      Public
      MATLAB
      •
      MIT License
      •0•5•0•0•Updated Jan 27, 2026Jan 27, 2026

    • s3fs

      Public
      S3 Filesystem
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •289•0•0•0•Updated Jan 21, 2026Jan 21, 2026

    • accelerated_features

      Public
      Fork of the original XFeat repository for increased stability
      Jupyter Notebook
      •
      Apache License 2.0
      •196•0•0•0•Updated Jan 20, 2026Jan 20, 2026

    • dockerfiles

      Public
      Docker images used within scalableminds :whale:
      Python
      •
      MIT License
      •1•1•3•1•Updated Jan 13, 2026Jan 13, 2026

    • slurm-packages

      Public
      Slurm packages and dockerfiles.
      Dockerfile
      •0•0•0•0•Updated Dec 4, 2025Dec 4, 2025

    • zarrita

      Public archive
      Python
      •
      MIT License
      •6•20•1•1•Updated Nov 12, 2025Nov 12, 2025

    • webknossos-wrap

      Public
      Efficient 3D volume storage format for webKnossos and analyses
      Rust
      •
      MIT License
      •3•8•9•0•Updated Oct 21, 2025Oct 21, 2025

    • build-wheels

      Public
      Python
      •0•0•0•0•Updated Sep 22, 2025Sep 22, 2025

    • prometheus-slurm-exporter

      Public
      Prometheus exporter for performance metrics from Slurm.
      Go
      •
      GNU General Public License v3.0
      •173•0•0•0•Updated Jul 22, 2025Jul 22, 2025

    • fossildb

      Public
      Versioned Key-Value Store with RocksDB backend and gRPC API
      Scala
      •
      MIT License
      •0•13•4•0•Updated Jul 21, 2025Jul 21, 2025

    • mkdocs-video

      Public
      MkDocs Video plugin
      Python
      •
      MIT License
      •15•1•0•0•Updated Jul 8, 2025Jul 8, 2025

    • zarr-python

      Public
      An implementation of chunked, compressed, N-dimensional arrays for Python.
      Python
      •
      MIT License
      •383•0•0•0•Updated Jun 22, 2025Jun 22, 2025

    • n5-universe

      Public
      Functionality shared across all n5
      Java
      •
      BSD 2-Clause "Simplified" License
      •6•0•0•0•Updated May 20, 2025May 20, 2025

    • numcodecs

      Public
      A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.
      Python
      •
      MIT License
      •110•0•0•0•Updated Apr 22, 2025Apr 22, 2025

    • zarr-java2

      Public
      Java implementation of the Zarr Specification
      Java
      •
      MIT License
      •18•1•0•0•Updated Apr 22, 2025Apr 22, 2025

    • zarr.webknossos.org

      Public
      Gallery of OME-Zarr datasets from WEBKNOSSOS
      JavaScript
      •
      MIT License
      •2•0•0•0•Updated Apr 9, 2025Apr 9, 2025

    • redux-saga

      Public
      An alternative side effect model for Redux apps
      JavaScript
      •
      MIT License
      •1.9k•0•0•0•Updated Feb 26, 2025Feb 26, 2025

    • siibra-matlab

      Public
      Matlab interface to the siibra toolsuite
      MATLAB
      •
      Apache License 2.0
      •2•0•0•0•Updated Dec 16, 2024Dec 16, 2024

    • n5-zarr

      Public
      Zarr filesystem backend for N5
      Java
      •
      BSD 2-Clause "Simplified" License
      •18•0•0•0•Updated Nov 21, 2024Nov 21, 2024

    • blosc-java

      Public
      Java
      •
      MIT License
      •0•1•1•0•Updated Nov 20, 2024Nov 20, 2024

    • n5-blosc

      Public
      Blosc compression for N5
      Java
      •
      BSD 2-Clause "Simplified" License
      •6•0•0•0•Updated Nov 20, 2024Nov 20, 2024

    • wknml

      Public archive
      Python library for working with webKnossos NML files
      hacktoberfest
      Python
      •
      MIT License
      •3•0•3•0•Updated Aug 7, 2024Aug 7, 2024

    • remarkable

      Public
      Markdown parser, done right. Commonmark support, extensions, syntax plugins, high speed - all in one. Gulp and metalsmith plugins available. Used by Facebook, D…
      JavaScript
      •
      MIT License
      •378•0•0•0•Updated May 17, 2024May 17, 2024

    • prop-types

      Public
      Runtime type checking for React props and similar objects
      JavaScript
      •
      MIT License
      •349•0•0•1•Updated May 17, 2024May 17, 2024

    • invoice-compiler

      Public
      Generate invoices from YAML files using puppeteer.
      HTML
      •5•22•0•1•Updated Mar 29, 2024Mar 29, 2024

    • trigger

      Public template
      Abstract React Trigger
      TypeScript
      •
      MIT License
      •239•0•0•0•Updated Mar 11, 2024Mar 11, 2024

    • n5-http

      Public
      N5 library implementation using HTTP(S) backend.
      Java
      •
      BSD 2-Clause "Simplified" License
      •7•0•0•0•Updated Feb 2, 2024Feb 2, 2024

    • zarr-specs

      Public
      Zarr core protocol for storage and retrieval of N-dimensional typed arrays
      Other
      •32•0•0•0•Updated Jan 8, 2024Jan 8, 2024