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    355 repositories

    • OHDSI-Usagi

      Public
      Usagi is an application to help create mappings between coding systems and the Vocabulary standard concepts.
      Java
      •34•0•0•0•Updated Feb 19, 2026Feb 19, 2026

    • kotobuki

      Public
      Update Usagi mappings with kotobuki
      pythonetlohdsiomopusagiomop-cdm
      Python
      •
      Apache License 2.0
      •0•3•2•5•Updated Feb 19, 2026Feb 19, 2026

    • ot-ai-api

      Public
      JavaScript
      •
      Apache License 2.0
      •1•0•0•5•Updated Feb 18, 2026Feb 18, 2026

    • CohortDiagnosticsVignette

      Public
      An R package for performing various cohort diagnostics.
      R
      •55•0•0•0•Updated Feb 4, 2026Feb 4, 2026

    • react-json-to-table

      Public
      react-json-to-table
      TypeScript
      •
      GNU General Public License v3.0
      •30•38•14•9•Updated Feb 3, 2026Feb 3, 2026

    • ot-ui-apps

      Public
      TypeScript
      •
      Apache License 2.0
      •17•1•0•19•Updated Jan 21, 2026Jan 21, 2026

    • omop-cdm

      Public
      SQLAlchemy definition of the OHDSI OMOP CDM
      Python
      •
      Apache License 2.0
      •0•5•0•2•Updated Jan 13, 2026Jan 13, 2026

    • platform-api

      Public
      GraphQL and Rest API rewrite of the current Open Targets platform API
      Scala
      •
      Apache License 2.0
      •8•0•0•0•Updated Dec 15, 2025Dec 15, 2025

    • fair-package-registry

      Public
      FAIR Package Registry PoC by the Dutch Health Care Institute and The Hyve
      Python
      •0•0•0•0•Updated Dec 12, 2025Dec 12, 2025

    • opentargets-mcp

      Public
      MCP server for Open Targets Data
      Python
      •
      MIT License
      •9•0•0•0•Updated Dec 10, 2025Dec 10, 2025

    • OHDSI-WhiteRabbit

      Public
      WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with Rabbi…
      Java
      •
      Apache License 2.0
      •97•0•0•3•Updated Dec 2, 2025Dec 2, 2025

    • w3id.org

      Public
      Website source code for w3id.org.
      HTML
      •1.6k•0•0•0•Updated Dec 2, 2025Dec 2, 2025

    • v6-omop-cohort-diagnostics

      Public
      Python
      •
      MIT License
      •1•0•0•1•Updated Nov 5, 2025Nov 5, 2025

    • vulnerability-scanning

      Public
      GitHub action to report vulnerabilities as issues
      MIT License
      •0•0•1•0•Updated Oct 27, 2025Oct 27, 2025

    • BioCypher-OT

      Public
      Python
      •
      MIT License
      •8•2•0•0•Updated Oct 2, 2025Oct 2, 2025

    • biochatter

      Public
      Backend library for conversational AI in biomedicine
      Jupyter Notebook
      •
      MIT License
      •55•0•0•2•Updated Sep 3, 2025Sep 3, 2025

    • cbioportal-frontend

      Public
      React Frontend of cBioPortal :tada:
      TypeScript
      •
      GNU Affero General Public License v3.0
      •375•0•0•15•Updated Sep 1, 2025Sep 1, 2025

    • fairspace

      Public archive
      Fairspace provides a secure environment for managing research data.
      metadatardfwebdavfairresearch-datafairspace
      JavaScript
      •
      Apache License 2.0
      •6•14•0•4•Updated Aug 13, 2025Aug 13, 2025

    • biochatter-server

      Public
      Flask server for BioChatter integration into web apps
      Python
      •
      MIT License
      •10•0•0•0•Updated Aug 5, 2025Aug 5, 2025

    • v6-basic-omop-queries

      Public
      vantage6
      Python
      •
      MIT License
      •2•0•0•0•Updated May 8, 2025May 8, 2025

    • synthetic-breast-cancer-OMOP-database

      Public
      OMOP database for IKNL synthetic breast cancer dataset
      PLpgSQL
      •3•0•0•0•Updated May 4, 2025May 4, 2025

    • genetics-pipe

      Public
      Scala
      •
      Apache License 2.0
      •2•0•0•0•Updated Apr 30, 2025Apr 30, 2025

    • cbioportal

      Public
      cBioPortal topic branches at The Hyve
      cbioportal
      Java
      •
      GNU Affero General Public License v3.0
      •808•3•0•0•Updated Apr 10, 2025Apr 10, 2025

    • report-vulnerability-image

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

    • report-vulnerability

      Public
      Github action for reporting a vulnerability
      MIT License
      •0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

    • gentropy

      Public
      Open Targets python framework for post-GWAS analysis
      Jupyter Notebook
      •
      Apache License 2.0
      •15•0•1•3•Updated Apr 3, 2025Apr 3, 2025

    • biocypher

      Public
      A unifying framework for biomedical research knowledge graphs
      Python
      •
      MIT License
      •45•1•0•8•Updated Apr 2, 2025Apr 2, 2025

    • vantage6

      Public
      The main vantage6 repository: code for the central server, nodes, CLI and Python Client
      Python
      •
      Apache License 2.0
      •18•0•0•0•Updated Apr 1, 2025Apr 1, 2025

    • genetics-v2g-data

      Public
      Workflows to generate cis-regulatory datasets used for variant-to-gene (V2G) assignment in Open Targets Genetics
      Python
      •
      Apache License 2.0
      •8•0•0•0•Updated Mar 31, 2025Mar 31, 2025

    • OnToma

      Public
      Map your disease and phenotype terms to the Open Targets platform ontology
      Python
      •
      Other
      •6•0•0•8•Updated Mar 10, 2025Mar 10, 2025