Repositories list

• exploratory-data-analysis

  Public
  Source code for the book Exploratory Data Analysis, used in the accompanying WUR course BIF20806.

  educationdata-scienceplants+ 1r-language

  R

  •

  Other

  •1•0•0•0•Updated Feb 18, 2026Feb 18, 2026

• plantEDA

  Public
  Example datasets for use with the Exploratory Data Analysis book

  R

  •

  Other

  •0•0•0•0•Updated Feb 11, 2026Feb 11, 2026

• hmm-gene-prediction

  Public
  Notebooks with examples on how to use HMMs for prediction protein-coding genes in eukaryotic genomes.

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Oct 13, 2025Oct 13, 2025

• introduction-to-bioinformatics

  Public
  Source code for the book Introduction to Bioinformatics, used in the accompanying WUR course BIF20306

  educationbioinformaticsbook+ 1jupyterbook

  TeX

  •

  Other

  •3•2•1•3•Updated Sep 12, 2025Sep 12, 2025

• package_publishing_example

  Public
  Example repository for a uv-managed python project

  pythonpackagingconda+ 3publishingeducational-projectuv

  Python

  •

  MIT License

  •2•7•0•0•Updated Mar 25, 2025Mar 25, 2025

• regulatory-rnn

  Public
  Reimplementation of "Finding gene network topologies for given biological function with recurrent neural network" (Shen et al. 2020) for educational purposes.

  educationdeep-learningdevelopmental-biology

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Feb 20, 2025Feb 20, 2025

• .github

  Public
  0•0•0•0•Updated Feb 5, 2025Feb 5, 2025