SereniPy

SereniPy is a Python library for parsing and processing IP2 specific MS files. Might work with some sequest file too.

Supported File Formats

MS2 Files

MS2 files containing mz, intensity and optionally charge

SQT Files (Sequest Results)

• V1.4.0: Basic SQT format
• V2.1.0: Extended format with ion mobility data
• V2.1.0_ext: Extended format with additional TIMS scores
• V2.1.0_robin_random: Specialized variant

DTASelect-filter Files

• V2.1.12: Basic DTASelect format
• V2.1.12_rt: With retention time data
• V2.1.12_paser: With PASER-specific fields
• V2.1.13: Updated format with ion mobility
• V2.1.13_timscore: With TIMS scoring data

Other formats (Not tested)

census, dtaselect, project, idx

Installation

pip install serenipy