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Add new de novo prediction features for wastewater and mixed samples#282

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hoelzer wants to merge 3 commits intomasterfrom
devider
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Add new de novo prediction features for wastewater and mixed samples#282
hoelzer wants to merge 3 commits intomasterfrom
devider

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@hoelzer hoelzer commented May 16, 2025

This is a completely wip PR while working on integrating additional features as partly documented in #275 .

So far, the idea is to

  • evaluate/finalize frejya as reference-based approach
  • adding additional tool(s) for de novo detection of amplicon clusters and associated mutation profiles (e.g. via devider and the covariant function of freyja)
  • and finally comparing the de novo detected mutation profiles w/ known ones from patient samples to ring a bell if something potentially new/more diverse pops up

@hoelzer hoelzer marked this pull request as draft May 16, 2025 09:12
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