Skip to content

R + Shiny case study on U.S. COVID-19 vaccination disparities using CDC and economic data (live app)

Notifications You must be signed in to change notification settings

rpushkar9/Covid-Vaccination-study

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

2 Commits
 
 
 
 
 
 

Repository files navigation

COVID-19 Vaccination Disparity Study — Case Study (Live App, No Public Source)

Live app: https://arbitrary.shinyapps.io/final-project-repositories-sophiebalint/_w_6adb59bd/
Timeline: Apr 2023 – Jun 2023
Affiliation: University of Washington Information School
Stack: R (analysis & visualization), Shiny (interactive app)

This repository documents the project and links to the live app. The source code is not public; this case study summarizes scope, methods, and results.


Overview

This project analyzes how economic factors relate to COVID-19 vaccination rates across U.S. regions. We combined publicly available CDC vaccination data with regional economic indicators to explore correlations and trends, then published an interactive Shiny app so users can slice the data dynamically.


Objectives

  • Bring together vaccination and economic data into a single, clean dataset for analysis.
  • Quantify and visualize relationships between vaccination rates and selected economic measures.
  • Provide a self-serve interactive interface (Shiny) for regional exploration and comparison.
  • Produce a Data Nutrition Label to document data provenance, coverage, limitations, and appropriate use.

Data & Preparation

  • Sources: CDC vaccination rates and publicly available economic indicators at regional levels.
  • Integration: Normalized field names and merged disparate inputs into one CSV to maintain integrity and simplify downstream analysis.
  • Quality checks: Verified joins, handled missing values, standardized region identifiers, and ensured consistent date coverage.

(Note: Exact raw datasets are not redistributed in this repository.)


Methods

  • Exploratory analysis and statistical summaries in R to examine correlations between vaccination rates and economic variables.
  • Visualizations (time series, regional comparisons) to surface disparities and patterns.
  • Interactive Shiny app to filter by region and variables, with dynamic plots and tables.
  • Data Nutrition Label created to capture data lineage, assumptions, collection windows, and known caveats.

The Shiny App (how to explore)

  1. Open the live app: https://arbitrary.shinyapps.io/final-project-repositories-sophiebalint/_w_6adb59bd/
  2. Choose a region and one or more economic indicators to compare against vaccination rates.
  3. Use the controls to filter time windows or subgroups; charts and tables update interactively.
  4. Hover over points to see values; export views where available.

Findings (high level)

  • Identified correlations between vaccination rates and selected socioeconomic measures that varied across regions.
  • The app supports regional comparisons and makes disparities visible to non-technical audiences.
  • The Data Nutrition Label clarifies how to interpret results responsibly and where caution is warranted.

(Quantitative effect sizes are not included here; see the app for visual exploration.)


Limitations

  • Observational analysis: correlations do not imply causation.
  • Data coverage may vary by region and date; some indicators have missing or lagged values.
  • Granularity is limited to the most consistent regional breakdowns available across sources.

My Contribution

  • Consolidated multi-source data into a single CSV with integrity checks.
  • Built the interactive Shiny app for dynamic exploration.
  • Performed statistical analysis in R and authored a Data Nutrition Label to document transparency and limitations.
  • Summarized insights relevant to public health and socioeconomic context.

Screenshots

Intro & Data Sources
Intro and data sources

Vaccines vs. Income (by manufacturer)
Total doses vs. income, manufacturer filter

Income-Normalized Vaccine Plot
Income-normalized scatter

Correlation Matrix
Correlation heatmap of vaccine and economic variables

Fully Normalized Vaccine Plot
Normalized doses vs. income scatter, by manufacturer

Takeaways & About
Study takeaways and authorship


Acknowledgements

University of Washington Information School. Data from the CDC and public economic datasets (attributed within the app and Data Nutrition Label).

About

R + Shiny case study on U.S. COVID-19 vaccination disparities using CDC and economic data (live app)

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published