0.1.7 2026-02-03
Bug fixes
Breaking changes
- Require NumPy 2 (#426)
- Require tskit >= 1.0.
- The default
isolated_as_missingbehaviour for tskit conversion now follows
tskit's default (currentlyTrue). To get the previous behaviour, create a
model mapping usingts.map_to_vcf_model(isolated_as_missing=False)and pass
it via themodel_mappingparameter (or usetskit2zarr convert --isolated-as-ancestral). - The
contig_idandisolated_as_missingparameters to
bio2zarr.tskit.converthave been removed; set these via
tskit.TreeSequence.map_to_vcf_modeland pass the returned mapping via the
model_mappingparameter.
Maintenance
- Add support for Python 3.13