chore: add codespell support (config, workflow to detect/not fix) and make it fix some typos#275
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yarikoptic wants to merge 7 commits intosnap-stanford:mainfrom
Open
chore: add codespell support (config, workflow to detect/not fix) and make it fix some typos#275yarikoptic wants to merge 7 commits intosnap-stanford:mainfrom
yarikoptic wants to merge 7 commits intosnap-stanford:mainfrom
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Fixed ambiguous typos: - seach -> search (biomni/tool/literature.py:190) - docstring example - respons -> response (tutorials/biomni_101.ipynb:778) - truncated table cell - checkpoin -> checkpoint (tutorials/biomni_101.ipynb:771) - truncated table cell
Fixed typos automatically:
- succint -> succinct (biomni/utils.py:273)
- becuase -> because (biomni/utils.py:687)
- softwares -> software (biomni/agent/a1.py:1100, 1128)
- arugments -> arguments (biomni/tool/genomics.py:77)
- referece -> reference (biomni/tool/genomics.py:867)
- re-used -> reused (protocol file)
- heterogenous -> heterogeneous (protocol file)
- useable -> usable (protocol file)
- tendancy -> tendency (protocol file)
- homogenous -> homogeneous (protocol file)
- softwares -> software (biomni_env/README.md:12)
- Automaticlly -> Automatically (biomni_env/bio_env_py310.yml:14)
- isses -> issues (biomni_env/new_software_v008.sh:13)
=== Do not change lines below ===
{
"chain": [],
"cmd": "uvx codespell -w",
"exit": 0,
"extra_inputs": [],
"inputs": [],
"outputs": [],
"pwd": "."
}
^^^ Do not change lines above ^^^
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More about codespell: https://github.com/codespell-project/codespell .
I personally introduced it to dozens if not hundreds of projects already and so far only positive feedback.
CI workflow has 'permissions' set only to 'read' so also should be safe.