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This adds the %host covariate option to the run_mtxDE command. This allows the command to take in two additional variables:
host_colandreport.host_colis the name of the column that contains the percent host information for each sample in thereportdata.frame.The
reportdata.frame should contain two columns: sampleID (same name as metadata) andhost_col. ThesampleIDcolumn will be used to merge the metadata with the report.Then, if the formula doesn't contain
host_colit will be added to the end of the formula (ie: formula +host_col)Integration and two unit tests have been added to verify the function performs as expected.