Promptehr port#785

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jalengg wants to merge 24 commits intosunlabuiuc:masterfrom

jalengg:promptehr-port

Commits on Nov 23, 2025

[PromptEHR] Setup: Foundation structure with placeholder files (Phase 1)
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[PromptEHR] Data: Tokenization using PyHealth infrastructure (Phase 2.1)
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[PromptEHR] Data: Dataset and collator implementation (Phase 2.2)
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Commits on Nov 26, 2025

[PromptEHR] Generation: Visit structure sampling and generation functions (Phase 4)
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[PromptEHR] Training: PyHealth Trainer integration and checkpoint loading (Phase 5)
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[PromptEHR] Examples: Training and generation scripts for MIMIC-III
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Fix: Update AdamW import and venv path in training scripts
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Fix: Add logger parameter to PromptEHRDataset initialization
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Fix: Add logger parameter to EHRDataCollator
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Fix: Correct PromptEHR API usage in example script
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Commits on Dec 5, 2025

Commits on Dec 7, 2025

Add: Local CPU generation script and tokenizer compatibility
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Commits on Dec 8, 2025

Merge remote-tracking branch 'origin/master' into promptehr-port
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Commits on Jan 14, 2026

Commits on Jan 15, 2026

add csv
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Commits on Feb 3, 2026

Clean: PromptEHR production code with critical bug fixes
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