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EHRMamba Implementation Into PyHealth #809

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Merged
jhnwu3 merged 9 commits into from
Feb 4, 2026
Merged

EHRMamba Implementation Into PyHealth #809

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8359ad2
EHRmamba implementation for pyhealth
lehendo Feb 3, 2026
40da2a4
Forgot init
lehendo Feb 3, 2026
53446a2
Add tests and example notebook
lehendo Feb 3, 2026
5ffc70c
Updated icustays csv for completion
lehendo Feb 3, 2026
d25e7f6
Add docs
lehendo Feb 3, 2026
4f3fd07
Merge branch 'sunlabuiuc:master' into ehrmamba
lehendo Feb 3, 2026
602d40b
Merge branch 'sunlabuiuc:master' into ehrmamba
lehendo Feb 3, 2026
afb01db
Scripts for full mimic 4 and length of stay tests
lehendo Feb 4, 2026
6983e9b
Merge branch 'sunlabuiuc:master' into ehrmamba
lehendo Feb 4, 2026
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1 change: 1 addition & 0 deletions docs/api/models.rst
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Expand Up @@ -21,6 +21,7 @@ We implement the following models for supporting multiple healthcare predictive
models/pyhealth.models.SafeDrug
models/pyhealth.models.MoleRec
models/pyhealth.models.Deepr
models/pyhealth.models.EHRMamba
models/pyhealth.models.ContraWR
models/pyhealth.models.SparcNet
models/pyhealth.models.StageNet
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14 changes: 14 additions & 0 deletions docs/api/models/pyhealth.models.EHRMamba.rst
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@@ -0,0 +1,14 @@
pyhealth.models.EHRMamba
===================================

EHRMamba: Mamba/SSM-based foundation model for electronic health records. Uses a single callable MambaBlock and the complete EHRMamba model compatible with PyHealth tasks and Trainer.

.. autoclass:: pyhealth.models.MambaBlock
:members:
:undoc-members:
:show-inheritance:

.. autoclass:: pyhealth.models.EHRMamba
:members:
:undoc-members:
:show-inheritance:
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