v2.6.5.3: Added MSVC Windows libraries

Using default naming for libraries

v2.6.5.2: Fix library packaging, updating workflows

Retire python 3.8 for conda

cMaBoSS 1.0.0b31: python 3.14 compatible release

v2.6.5.1

Bumped cmaboss to 1.0.0b31

v2.6.5: Node scheduling, fix cmaboss formula parsing

• First release of node scheduling, for maboss and cmaboss
• Fix a bug in parsing formulas in cmaboss
• Added dynbitset version to releases

Full Changelog: v2.6.4...v2.6.5

v2.6.4: : Bugfix Physical Random Number Generator on windows

• Automatically switching to Mersenne twister RNG on Windows when cfg is set to physical random number generator

v2.6.3: Experimental support for node scheduling

• Experimental support for node scheduling, accessible from the .cfg file. Ex:

TNF.schedule = 20:0.1, 40:0.9, 60:0.1, 80:0.9, 100:0.1;

will activate TNF for 10% of the trajectories at time=20, activate it for 90% at time=40, activate it for 10% at time=60, ...

• Test for cmaboss and maboss are now in different folders (should fix file clobbing issues).

v2.6.2: Windows support for conda packages, cmaboss conda and wheels.

• Windows version of conda package
• Windows version of cmaboss
• Dynamical bitset now part of releases (experimental)
• Fix ensemble simulation when sample_count < emsemble size
• Fix out of bounds in trajectory epilogue
• Implemented support for std::thread
• MSVC compatibility
• New build system with cmake
• Reorg of source files

v2.6.1: cMaBoSS overhaul, Fix bug with missing timesteps, Added custom PopMaBoSS output

• cMaBoSS overhaul : improved structure, added many methods to modify MaBoSS and PopMaBoSS simulation objects.
• Fix bug which skipped timesteps at the end of simulations
• Added custom output for PopMaBoSS, allowing to cumulate directly on simple metrics.
• Added durations to Observed graphs.

v2.6.0: Observed State Transition Graphs, PopMaBoSS MPI

• Introducing Observed State Transition Graphs, based on a selected list of nodes
• MPI Support for PopMaBoSS
• Support of HDF5 export (experimental)
• Granular pop size in PopMaBoSS (experimental)
• Python 3.13 support in PyPi (experimental)
• Tests now using latest libSBML version (5.20.4)

Added numpy 2.0 support for cMaBoSS, improved memory management.

MaBoSS:

• Fix a few memory leaks in PopMaBoSS model parsing

cMaBoSS:

• Added support for numpy 2.0
• Now forcing malloc to release memory
• Added support for PopMaBoSS