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Added GC reporting to fastq_peek, doesn't work cause no bc in venv#2

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jfavate wants to merge 5 commits intomainfrom
jf-alter_fastqpeek-dev
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Added GC reporting to fastq_peek, doesn't work cause no bc in venv#2
jfavate wants to merge 5 commits intomainfrom
jf-alter_fastqpeek-dev

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@jfavate jfavate commented Mar 3, 2025

Description

This update adds calculation of GC content for a set of reads, although it doesn't work because there is no bc in the AWS virtual environment so really, you shouldn't merge this because it doesn't work.

Type of change

Please delete options that are not relevant.

  • Breaking change (fix or feature that would cause existing functionality to not work as expected)

How Has This Been Tested?

Ran against the provided sample fastq, it does not work as expected.

Checklist:

  • My code adheres to the repository style guide
  • I have performed a self-review of my own code
  • I have commented my code, particularly in hard-to-understand areas
  • My changes generate no new warnings
  • New and existing tests pass locally with my changes

cimendes
cimendes previously approved these changes Mar 12, 2025
@cimendes cimendes dismissed their stale review March 12, 2025 15:36

demo purposes

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2 participants