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v0.4.0

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@kevinlibuit kevinlibuit released this 08 Apr 20:54
· 287 commits to main since this release
53d351a

This release adds MLST profiling to the TheiaProk_Illumina_PE workflow.

Additional updates to TheiaProk_Illumina_PE:

  • Data screening task added to avoid workflow failures caused by low-quality input read data
  • QC metrics adjusted for WGS bacterial data
  • Capture of n50 from Quast report (Thanks, @erikwolfsohn!)
  • Exposure of minimum percent length and coverage parameters exposed in Abricate task
  • Replacing the Quast assembly length with the Mash estimated genome size for the cg-pipeline read coverage calculations
  • Allow for additional fields of metadata to be exported to taxon tables: collection_date, originating_lab, city, county, zip