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v0.5.0

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@kapsakcj kapsakcj released this 12 May 18:22
· 285 commits to main since this release
v0.5.0
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Learn about vigilant mode.

What's Changed

  • Add 2 kraken2 workflows (Single End & Paired End) by @rpetit3 in #70
  • New NCBI-AMRFinderPlus workflow and integration in TheiaProk_Illumina_PE wf by @kapsakcj in #65
    • TheiaProk_Illumina_PE workflow - replaced abricate task with NCBI-AMRFinderPlus for AMR gene detection
    • Fixed integer math in read_screen task by @sage-wright , also in #65
  • mlst task updated to 2.22.0 (default docker image updated to staphb/mlst:2.22.0)
  • updated gambit_query workflow with updated task (gambit v0.4.0) by @kevinlibuit
  • export_taxon_tables feature now includes NCBI-AMRFinderPlus outputs

Full Changelog: v0.4.0...v0.5.0

Contributors

rpetit3, kapsakcj, and 2 other contributors
Assets 2
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