v1.2.0

This minor release implements several enhancements and improvements to the species-specific genomic characterization modules

New tasks

Staphylococcus aureus

Three new tasks have been implemented for S. aureus genomic characterization: spatyper,
staphopia-sccmec and agrvate.

Neisseria spp.

• Neisseria gonorrhoeae: a new task, ngmaster, has been implemented.

• Neisseria meningitidis: a new task, meningotype, has been implemented.

Mycobacterium tuberculosis

The tbprofiler task now has an additional set of outputs that can be accessed by
setting tbprofiler_additional_outputs option to true.

What's Changed

• mlst: new String output "ts_mlst_allelic_profile" by @kapsakcj in #209
• Add neisseria subwf: ngmaster and meningotype by @kapsakcj in #211
• New output columns from TBProfiler Task by @cimendes in #217
• Adds Staph aureus subwf by @kapsakcj in #213
• Update README.md by @kevinlibuit in #220
• Add comma by @sage-wright in #222
• add missing tbprofiler optional outputs to export_taxon_tables inputs by @cimendes in #224
• Update version to v1.2.0 by @sage-wright in #223

Full Changelog: v1.1.1...v1.2.0

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