This repository contains all CWL descriptions of the MGnify pipeline version 5.0.
Dadaist2 🟨 Highway to R
A web app for environmental DNA metabarcoding analysis
Automated virus amplicon sequencing analysis program integrated with Nextflow pipeline manager.
amplicon analysisng pipelines based on luigi with qiime2-dada2/ qiime2-deblur/vsearch/usearch
A pipeline to analyse marine fish amplicon data
Nanopore sequencing-based Amplicon Pipeline: optimised for full-length, 16S and 18S mixed amplicon datasets, in a fast and computationally efficient manner, setup for use of 515Y/926R primers, but also compatible with other cross-domain primers.
An End-to-End GUI for real-time taxon identification via barcoded nanopore amplicon sequencing data. The pipeline is built using R Shiny library and majorly targets users with minimal coding background. Users can get from sequencing to results in a few clicks.
TEIXEIRA, J. V. A.; SOUZA, E. C. Use of microbial fuel cell systems in wastewater treatment in connection with bioenergy generation. Desafios. Revista Interdisciplinar da Universidade Federal do Tocantins. Palmas, 2025. DOI: // Microbial fuel cells: Unveiling microbial diversity for sustainable wastewater treatment and bioenergy production
The code from independent projects completed during bioinformatics in Fall 2025
Snakemake workflow to process circRNA AmpliconSeq datasets generated to study circRNAs in KSHV and human hosts using divergent primers.
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