LLM-based gene function enrichment tool
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Feb 19, 2025 - Jupyter Notebook
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gene-enrichment
Here are 13 public repositories matching this topic...
DOT
biology optimization spatial multi-objective-optimization frank-wolfe spatial-transcriptomics gene-enrichment cell-type-deconvolution
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Feb 10, 2026 - R
A powerful abstraction of gene databases
bioinformatics gene-expression gene-regulation gene-ontology drug-discovery genes bioinformatics-tool drug-target-interactions gene-enrichment gene-relationships gene-databases
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Dec 17, 2024 - Python
Computational protemics analysis of cancer cell-lines at the level of single-cells
bioinformatics clustering dimensionality-reduction network-analysis kegg-pathway gsea psea correlation-analysis single-cell-proteomics gene-enrichment go-enrichment cancer-proteomics
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May 31, 2023 - R
Chain of Thought Gene Enrichment Report Generation
bioinformatics agent-based brad rag gene-enrichment llms chain-of-thought agentic-workflow agentic-ai retriaval-augmented-generation
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Mar 6, 2025 - Python
differential gene expression analysis of Data from the study titled: 'Antipsychotic drug trifluoperazine as a potential therapeutic agent against nasopharyngeal carcinoma'
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Mar 24, 2025 - Jupyter Notebook
A Web-Based Gene-Enrichment and Functional Annotation Tool
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Dec 2, 2023 - Python
A tool for processing and analyzing RNA-Seq data. This tool downloads and converts the raw count values to TPM-normalized matrices and performs Gene Set Enrichment Analysis (GSEA) to output various plots.
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Dec 30, 2023 - Python
Random selection of useful code chunks and examples for bioinformatics
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Feb 2, 2026 - Jupyter Notebook
Quantify the druggable chemical space, functional pathways and protein classes targeted by novel small molecules and state-of-the-art proteomics methodologies
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Sep 3, 2024 - Jupyter Notebook
BIGO: A web application to analyse gene enrichment analysis results
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Jul 26, 2022 - Java
A layered view of gene annotation.
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Jan 22, 2026 - R
Set of classes, codes and scripts which I use for Omics data analysis
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Dec 13, 2023 - R
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