Simple bacterial assembly and annotation pipeline
A fast tool for hybrid genome assembly of long and short reads
UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads
Pipeline for hybrid assembly using short and long reads.
Nextflow wrapper for the dragonflye assembler, with additional QC
A scalable Nextflow pipeline for automated WGS analysis, optimized for Oxford Nanopore and hybrid ONT–Illumina assemblies in clinical microbiology research.
Genomics Part of the KAUST High Throughput Sequencing Workshop 2019
A repository to benchmark and automate genome assembly evaluation. Utilize scripts for Dragonflye with diverse polishing models on Illumina and Nanopore reads to fine-tune genome assemblies
SMP: A Salmonella Methylation analysis Pipeline
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