Simulation and optimization of neural circuits for MEG/EEG source estimates

Code Generation Framework For NEURON MODeling Language

A MATLAB neuron simulator. Very fast (written in C++). Flexible (fully object oriented). Immediate (live manipulation in MATLAB). Comes with a powerful parameter optimizer. Get started ➡️

This is now in the docs folder of the main NEURON repository. Make all changes there.

A web-based handwritten digit recognizer with neural network visualization. See the activations of every neuron in real-time as your digit is processed.

Biophysically Realistic Model of the Olfactory Bulb Mitral-Tufted-Granule Cell Pathway

A Blender addon for visualizing your NEURON model, with customizable voltage traces.

3D Spiking neural network simulation exploring Spike Timing Dependent Plasticity (STDP)

Simple Neural Development Simulator with Thresholds and Settings

Neuron++ is a library which wraps NEURON (http://www.neuron.yale.edu) with easy to use Python objects.

Python toolbox for creating and validating single-cell neuronal models with active dendrites.

Activity patterns in a subthalamopallidal network of the basal ganglia model (Terman et al 2002)

An in silico framework for multi-scale modeling and analysis of in vivo neuron-network mechanisms

Paper describing the xolotl neuron and network simulator. Includes Latex source and MATLAB code to reproduce every figure in the paper.

Multiplexed coding in Purkinje neuron dendrites (Zang and De Schutter 2021)

Virtual Human Retina: Simulating Neural Signalling, Degeneration, and Responses to Electrical Stimulation (Ly et al 2025)

Analytical derivation of the stochastic output of coincidence detection (CD) neurons

the bypass project repository

Kernel method to calculate LFPs from networks of point neurons (Telenczuk et al 2020)

Human and mouse Purkinje cell models (Masoli et al., 2024)