Bacterial surveillance pipeline.
[WORKING DRAFT] Curated list of awesome spatial epidemiology data exchange concepts, data reference and tooling
Repository listing all the measles resources and tools developed by ForeSITE
A comprehensive web platform for dengue surveillance and prevention, community engagement, and proactive response management in Quezon City with AI-powered prescriptive analytics and intervention capabilities.
Im Rahmen der Mental Health Surveillance (MHS) am Robert Koch-Institut (RKI) werden für eine Auswahl an Indikatoren der psychischen Gesundheit von Erwachsenen basierend auf Surveydaten Zeitreihen bestehend aus gleitenden Drei-Monats-Schätzern und Glättungskurven berechnet. Dadurch sollen Entwicklungen in der psychischen Gesundheit der erwachsene...
This project provides an automated data pipeline for extracting, transforming, and analysing health data from a DHIS2 instance. It includes querying various health indicators at the facility level, enriching data with organisational details (districts and provinces), exporting results to structured CSV and loading to PostgreSQL.
This repository contains the code for the manuscript Ensemble-labeling of infectious diseases time series to evaluate early warning systems with which you can reproduce the manuscript's results and figures.
Easy to view version of RKI SARS-CoV-2 wastewater surveillance reports
A Qualitative Descriptive Study Comprising of Discussions And Recommendations
Pipeline para montagem direcionada (gene-a-gene) a partir de leituras pareadas.
Implementation of a dynamic transmission model for modelling meningococcal transmission in Germany at the carrier level, as well as estimating the effects of different vaccination strategies. The software makes it possible to reproduce the results of the manuscript "The impact of introducing meningococcal C/ACWY booster vaccination among adolesc...
Data from the Health Protection Surveillance Center in Ireland
Scripts em R para padronização/duplicidades/consolidação (DCC – e-SUS Notifica)
Center for Geography Harvard, TB services and accessibility
Im Datensatz "Daten des Übersterblichkeitsberichts" des Robert Koch-Instituts werden wöchentliche Daten zur Übersterblichkeit in Deutschland bereitgestellt. Der Datensatz enthält Angaben zum Wochendatum und zur jeweiligen Gruppe (z. B. Altersgruppen, Geschlecht oder Region). Für jede Gruppe wird die beobachtete Sterbefallzahl den modellbasiert e...
Der Wochenbericht des RKI zur Übersterblichkeit gibt einen Überblick über die aktuelle Entwicklung der Sterblichkeit in Deutschland. Zur Bestimmung der Übersterblichkeit werden die gegenwärtigen Sterbefallzahlen mit einem erwarteten Referenzwert verglichen, der aus den Sterbedaten der vergangenen Jahre abgeleitet wird. Übersteigt die aktuelle Za...
Master course thesis project done in 2024 about searching AMR genes in urban wastewater from two cities in Italy: Torino and Novara
I fine-tuned nanochat (from Andrej Karpathy) for Public health Surveillance, Epidemiology & disease outbreak detection.
The dataset "Supplementary raw data on cell chaining in an attenuated Listeria monocytogenes mutant" provides the raw images and data for the manuscript "On the role of cell chaining in the attenuation of a Listeria monocytogenes divIVA mutant" (https://doi.org/10.64898/2026.01.05.697648).
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