Modular single-cell transcriptomics pipelines for Alzheimer’s disease, integrating R and Python workflows.
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Jan 14, 2026 - R
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pyscenic
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Single-Cell Atlas Builder is a modular platform for processing, integrating, and visualizing single-cell RNA-seq datasets. It combines FastAPI, Scanpy, and CellTypist for efficient analysis, with optional LLM-powered summaries for cluster and pathway interpretation.
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Nov 17, 2025 - Python
Pipelines for single-cell data in Nextflow DSL2. Updated to run SCENIC single- and multi-run workflows with feather v2 cisTarget v10 resources
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Feb 9, 2026 - Nextflow
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