Sequence alignment tools

Python implementation of Striped Smith-Waterman Algorithm

Pairwise Sequence Aligment Tool (PSAT) a simple application to align sequences.

Global and Local Sequence Alignment

implementation and visualizations for sequence alignment algorithms

Implement parallel Smith Waterman algorithm on CUDA

💻 Project for the course of Algorithms for Bioinformtics

Web App para alinhamento de sequências de DNA

Applications that compute pairwise alignments of two biological sequences

C++ implementation of the Smith–Waterman algorithm, not yet optimized.

An R script that calculates a similarity matrix for a list of protein sequences with the aid of Bleakley-Yamanishi Normalized Smith-Waterman Similarity Score.

This program determines the optimal alignment of two nucleotide sequences using the Smith–Waterman algorithm. Optimality, of course, is determined by the values of the gap penalty g and the weight matrix (that lists all of the s(ai , bj )). Finally the program outputs the optimal similarity score along with the optimal alignment.

Smith Waterman algorithm Java implementation

Implementation of Sequence Alignment using Needleman-Wunsch and Smith-Waterman algorithms with fixed scoring values.

Smith-Waterman alignment implementation

AlnSeq runs a c coded Smith Waterman, Needleman Wunsch, and an Hirschberg.

A command line Python interface implementing simplified BLAST and Smith-Waterman algorithms, developed for a university course.

🧬 Implementation of the Smith-Waterman algorithm for aligning amino acid sequences.