StaphScope is a comprehensive bioinformatics tool for Staphylococcus aureus genomic analysis including MLST typing, spa typing, SCCmec analysis, antimicrobial resistance detection, virulence factors, plasmid profiling, and lineage prediction from whole genome sequencing data. Designed specifically for MRSA research

Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.

Application of Machine Learning with MALDI-TOF MS for Rapid Differentiation between Methicillin-susceptible and Methicillin-resistant Staphylococcus aureus

QUT Capstone Project featuring a vanilla javascript project designed to display genome information from a PostgreSQL database in a user friendly way. Allows genomes to be tagged in groups and generates simple aggregate statistics.

SCAPE - StaphyloCoccus Aureus Pangenome Exploration

A bioinformatics pipeline for RNA-Seq analysis of Staphylococcus aureus persisters under antibiotic stress, based on Peyrusson et al. (2020). Built with Nextflow and Docker for reproducibility.

This repository introduces the codes applied to the nasal microbial community of the latest available curated GEMs of D. pigrum and S. aureus.

Raw data and code for the Genomic Analysis of Singles and Pools (GASP) project - https://doi.org/10.1099/mgen.0.001111

Curve Growth modeling-IPASS project