Bowtie2QC

A Python bowtie2 QC plotter

Bowtie2 Mapping Log PE QC Plot

Bowtie2 Mapping Overall Plot

Getting Started

Install from pip

pip install bowtie2qc

see also https://pypi.org/project/bowtie2qc/

Usage

run ./examples/bowtie2QCExample.py with

./run_examples.sh

bowtie2QCExample.py:

import os
from bowtie2qc import bowtie2QC

current_path = os.path.abspath(os.getcwd())


def example_pdf():
    bowtie2QC.procress_logs_with_pdf([
        f"{current_path}/examples/example1.log",
        f"{current_path}/examples/example2.log",
        f"{current_path}/examples/example3.log"
    ])


if __name__ == '__main__':
    example_pdf()