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ERROR: Process (DIAMOND?) failed

Status: Open.

#282 In wwood/singlem;

· LiZhihua1982 opened on Jan 19, 2026

SingleM Pipe error: Unexpected line format for DIAMOND output

Status: Open.

#281 In wwood/singlem;

· magicprotoss opened on Jan 17, 2026

OTU table

Status: Open.

#268 In wwood/singlem;

· Fatemeh-qasemnejad opened on Nov 28, 2025

How did you add off-target entries to metapackage?

Status: Open.

#255 In wwood/singlem;

· Andyargueasae opened on Sep 17, 2025

Downstream statisical tests

Status: Open.

#224 In wwood/singlem;

· lauramason326 opened on Jun 9, 2025

Species-wise EM within vs across samples

Status: Open.

#222 In wwood/singlem;

· lauramason326 opened on May 13, 2025

Output taxonomic-level-coverage has integer levels when 0% species

Status: Open.

#214 In wwood/singlem;

· AroneyS opened on Apr 7, 2025

Applying singleM to single cell sequencing data

Status: Open.

#206 In wwood/singlem;

· lingrongjin opened on Jan 16, 2025

Comparing metagenome profiles with publicly available profiles from sandpiper

Status: Open.

#192 In wwood/singlem;

· adityabandla opened on Sep 11, 2024

Some potentially useful options to consider?

Status: Open.

#164 In wwood/singlem;

· adityabandla opened on Feb 26, 2024

singlem incorrectly parse sample name with paired-end data

Status: Open.

#151 In wwood/singlem;

· fplazaonate opened on Nov 20, 2023

Question on alpha diveristy

Status: Open.

#141 In wwood/singlem;

· LanSabb opened on Sep 21, 2023