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YangLab@Northwestern

This repo stores the codes for Yang lab projects

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  1. OctopuSV OctopuSV Public

    Efficient merging of structural variants from multiple SV callers and samples

    Python 32 1

  2. ScanNeo ScanNeo Public

    A pipeline for identifying indel derived neoantigens using RNA-Seq data

    Python 30 7

  3. pxblat pxblat Public

    PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT

    C 18

  4. ScanNeo2 ScanNeo2 Public

    Snakemake-based computational workflow for neoantigen prediction from diverse sources

    Python 16 1

  5. EasyEvo2 EasyEvo2 Public

    To use Evo2 easily

    Python 15 1

  6. ScanExitron ScanExitron Public

    A computational workflow for exitron splicing identification

    Shell 14 6

Repositories

Showing 10 of 26 repositories
  • pxblat Public

    PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT

    ylab-hi/pxblat’s past year of commit activity
    C 18 0 0 2 Updated Feb 10, 2026
  • DeepChopper Public

    Genomic Language Model Mitigates Chimera Artifacts in Nanopore Direct RNA Sequencing

    ylab-hi/DeepChopper’s past year of commit activity
    Rust 7 Apache-2.0 1 0 3 Updated Feb 9, 2026
  • OctopuSV Public

    Efficient merging of structural variants from multiple SV callers and samples

    ylab-hi/OctopuSV’s past year of commit activity
    Python 32 MIT 1 6 15 Updated Feb 6, 2026
  • yanglab-guide Public

    The repo contain content about yang's lab guide.

    ylab-hi/yanglab-guide’s past year of commit activity
    Python 2 MIT 2 0 0 Updated Feb 5, 2026
  • ScanITD Public

    A python tool to detect internal tandem duplication with robust variant allele frequency estimation

    ylab-hi/ScanITD’s past year of commit activity
    Python 12 MIT 3 0 0 Updated Feb 3, 2026
  • ChimeraLM Public

    A language model enables accurate structural variant detection in whole-genome amplified long-read sequencing

    ylab-hi/ChimeraLM’s past year of commit activity
    Python 3 Apache-2.0 0 0 0 Updated Jan 23, 2026
  • genogrove Public archive

    C++ Genomic Interval B+ Tree Library

    ylab-hi/genogrove’s past year of commit activity
    C++ 5 GPL-3.0 0 1 1 Updated Jan 1, 2026
  • nf_seCLIP Public

    Nextflow pipeline for seCLIP data processing

    ylab-hi/nf_seCLIP’s past year of commit activity
    Nextflow 0 0 0 0 Updated Dec 10, 2025
  • ylab-hi.github.io Public

    Official website for Yang Lab

    ylab-hi/ylab-hi.github.io’s past year of commit activity
    SCSS 0 0 0 0 Updated Dec 3, 2025
  • ScanNeo2 Public

    Snakemake-based computational workflow for neoantigen prediction from diverse sources

    ylab-hi/ScanNeo2’s past year of commit activity
    Python 16 MIT 1 7 0 Updated Nov 1, 2025

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