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RNASeq significance cutoffs

Status: Open.

#59 In bcbio/rnaseq-reports;

· eberdan opened on Oct 26, 2025

run GSVA in GitHub actions

Status: Open.

#51 In bcbio/rnaseq-reports;

· lpantano opened on Aug 26, 2025

missing mm39.rna.gtf.gz annotation file in https://github.com/bcbio/bcbioR/tree/main/inst/extdata/annotation

Status: Open.

Bug

#48 In bcbio/rnaseq-reports;

· ggrimes opened on Jul 4, 2025

Add gsea_rank_metric YAML parameter (default =stat) to choose GSEA ranking column

Status: Open.

#36 In bcbio/rnaseq-reports;

· ggrimes opened on May 30, 2025

DEG: if you get an error about integer conversion after running ComBat

Status: Open.

#23 In bcbio/rnaseq-reports;

· epartan opened on May 12, 2025

Plot heatmaps with only 2 groups being compared in multi-factor model

Status: Open.

#10 In bcbio/rnaseq-reports;

· epartan opened on Apr 4, 2025