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Updating tools/edger from version 3.36.0 to 4.8.2 #4905

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Updating tools/edger from version 3.36.0 to 4.8.2 #4905

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14 changes: 7 additions & 7 deletions tools/edger/edger.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -3,8 +3,8 @@
Perform differential expression of count data
</description>
<macros>
<token name="@TOOL_VERSION@">3.36.0</token>
<token name="@VERSION_SUFFIX@">7</token>
<token name="@TOOL_VERSION@">4.8.2</token>
<token name="@VERSION_SUFFIX@">0</token>
</macros>
<edam_topics>
<edam_topic>topic_3308</edam_topic>
Expand All @@ -19,12 +19,12 @@
</xrefs>
<requirements>
<requirement type="package" version="@TOOL_VERSION@">bioconductor-edger</requirement>
<requirement type="package" version="3.50.0">bioconductor-limma</requirement>
<requirement type="package" version="0.2.20">r-rjson</requirement>
<requirement type="package" version="1.20.3">r-getopt</requirement>
<requirement type="package" version="1.4.36">r-statmod</requirement>
<requirement type="package" version="3.66.0">bioconductor-limma</requirement>
<requirement type="package" version="0.2.23">r-rjson</requirement>
<requirement type="package" version="1.20.4">r-getopt</requirement>
<requirement type="package" version="1.5.1">r-statmod</requirement>
<!-- required for alpha function used with plotMD -->
<requirement type="package" version="1.1.1">r-scales</requirement>
<requirement type="package" version="1.4.0">r-scales</requirement>
</requirements>
<version_command><![CDATA[
echo $(R --version | grep version | grep -v GNU)", edgeR version" $(R --vanilla --slave -e "library(edgeR); cat(sessionInfo()\$otherPkgs\$edgeR\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", limma version" $(R --vanilla --slave -e "library(limma); cat(sessionInfo()\$otherPkgs\$limma\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", scales version" $(R --vanilla --slave -e "library(scales); cat(sessionInfo()\$otherPkgs\$scales\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", rjson version" $(R --vanilla --slave -e "library(rjson); cat(sessionInfo()\$otherPkgs\$rjson\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", getopt version" $(R --vanilla --slave -e "library(getopt); cat(sessionInfo()\$otherPkgs\$getopt\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
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