Branch for coadd + bugfixes + bump python versions

.github/workflows/testing.yml

@@ -9,25 +9,35 @@ on:
   pull_request:
     branches: [ master ]
 
+
 env:
-  default-python: 3.10
+  default-python: "3.13"
 
 jobs:
   build:
     strategy:
       fail-fast: false
       matrix:
-        os: [ubuntu-latest]
-        tox_env: [py37, py38, py39, py310]
         include:
+          - tox_env: py310
+            python-version: "3.10"
+          - tox_env: py311
+            python-version: "3.11"
+          - tox_env: py312
+            python-version: "3.12"
+          - tox_env: py313
+            python-version: "3.13"
           - tox_env: style
+            python-version: "3.13"
           - tox_env: check-manifest
+            python-version: "3.13"
           - tox_env: coverage
+            python-version: "3.13"
           - tox_env: docs
+            python-version: "3.13"
             pandoc: true
 
-    # The operative sistem
-    runs-on: ${{ matrix.os || 'ubuntu-latest' }}
+    runs-on: ubuntu-latest
 
     # the steps of the CI
     steps:

.gitignore

@@ -104,3 +104,6 @@ result_images/
 .pypirc
 logtesting
 outdata.prof
+
+# MacOS files
+*.DS_Store

.travis.yml

@@ -16,24 +16,24 @@ script:
 
 jobs:
     include:
-        - python: 3.6
-          env: TOXENV=py36
-        - python: 3.7
-          env: TOXENV=py37
-        - python: 3.8
-          env: TOXENV=py38
         - python: 3.10
-          env: TOXENV=py310
+          env: TOXENV=py10
+        - python: 3.11
+          env: TOXENV=py11
+        - python: 3.12
+          env: TOXENV=py12
+        - python: 3.13
+          env: TOXENV=py313
 
-        - python: 3.10
+        - python: 3.12
           env: TOXENV=style
-        - python: 3.10
+        - python: 3.12
           env: TOXENV=coverage
-        - python: 3.10
+        - python: 3.12
           env: TOXENV=docs
-        - python: 3.10
+        - python: 3.12
           env: TOXENV=docstyle
-        - python: 3.10
+        - python: 3.12
           env: TOXENV=check-manifest
 
 

docs/requirements_docs.txt

@@ -3,3 +3,5 @@ Sphinx>=5
 nbsphinx>=0.8
 sphinx-autobuild>=2021
 sphinx-rtd-theme>=1
+pygments>=2.0
+jupyter

docs/source/conf.py

@@ -43,6 +43,9 @@
     "nbsphinx",
 ]
 
+# List of patterns, relative to source directory, that match files and
+# directories to ignore when looking for source files.
+# This patterns also effect to html_static_path and html_extra_path
 exclude_patterns = [
     "_build",
     "source/.ipynb_checkpoints/*",
@@ -51,7 +54,11 @@
 
 numpydoc_class_members_toctree = False
 
-# nbsphinx_execute = 'never'
+# nbsphinx configuration - don't execute notebooks by default
+nbsphinx_execute = 'never'
+
+# Allow nbsphinx to use fallback lexer for unknown languages
+nbsphinx_codecell_lexer = 'ipython3'
 
 # Add any paths that contain templates here, relative to this directory.
 templates_path = ["_templates"]
@@ -93,14 +100,12 @@
 # Usually you set "language" from the command line for these cases.
 language = 'en'
 
-# List of patterns, relative to source directory, that match files and
-# directories to ignore when looking for source files.
-# This patterns also effect to html_static_path and html_extra_path
-exclude_patterns = []
-
 # The name of the Pygments (syntax highlighting) style to use.
 pygments_style = "sphinx"
 
+# Suppress warnings about unknown highlighting languages
+suppress_warnings = ['misc.highlighting_failure']
+
 # If true, `todo` and `todoList` produce output, else they produce nothing.
 todo_include_todos = True
 
@@ -224,12 +229,17 @@
 import subs
 
 if not ON_RTD:  # only import and set the theme if we're building docs locally
-    import sphinx_rtd_theme
+    try:
+        import sphinx_rtd_theme
 
-    html_theme = "sphinx_rtd_theme"
-    html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]
+        html_theme = "sphinx_rtd_theme"
+    except ImportError:
+        pass  # Use default theme if sphinx_rtd_theme is not available
 else:
-    from mock import Mock as MagicMock
+    try:
+        from unittest.mock import Mock as MagicMock
+    except ImportError:
+        from mock import Mock as MagicMock
 
     class Mock(MagicMock):
         @classmethod
@@ -243,3 +253,6 @@ def __getattr__(cls, name):
     [".. _{}: {}".format(k, v) for k, v in subs.TARGETS.items()]
     # ~ [".. |{}| replace:: {}".format(k, v) for k, v in subs.SUBSTITUTIONS.items()]
 )
+
+# nbsphinx handles IPython syntax highlighting automatically in modern versions
+# No manual lexer registration needed

docs/source/tutorial/index.rst

@@ -13,3 +13,4 @@ Contents:
     Tutorial02.ipynb
     Tutorial03.ipynb
     Tutorial04.ipynb
+    Tutorial05.ipynb